Single -cell Recognition of cell types

Important note: the SingeR browseR has been upgraded. It now uses a new SingleR object. Please refer to for more information.
To analyze single-cell data sets choose an item from the table and/or upload SingleR objects.
If you would like to add a dataset to this list please contact


Calculation in progress..

Use shift to select multiple cells in the scatter plot to show in the heatmap.

Download CSV

Calculation in progress..

Differential expression (DE) analysis between two sets. Choose multiple clusters/cell types in 'Set 1' and 'Set 2' and run a DE analysis between those sets. You may also leave both Set 2 empty to retrieve top markers differentiating Set 1 with all other cells.

Set 1


Set 2


Calculation in progress..