UCSF Bakar Computational Health Sciences Institute

Computational Health Applications

preterm_transcriptomics

Ishan Paranjpe Preterm Birth Transcriptomic Data Visualization application

singler

Aran Dvir SingleR application

cgt

Benjamin Glicksberg CGT application

hallmarks

Albert Yu

10kimmunomes

Kelly Zalocusky 10kimmunomes application

ptb_gwas

Nadav Rappoport Preterm Birth GWAS Data Visualization application

cidehr

Thomas Peterson CIDEHR application

xcell

Dvir Aran XCELL application

tcga-110

Katharine Yu A comprehensive transcriptomic analysis of cell lines

sle_clustering

Ishan Paranjpe SLE Integrative Clustering application

ptb_microbiome_metaanalysis

Idit Kosti Meta-Analysis of Vaginal Microbiome Data Provides New Insights into Preterm Birth

xcellview

Dvir Aran xCellView - visualize cell types enrichments (beta version)

buttelabcovid

ButteLab COVID Tracker application

harmonyrna

Matthew Elliott Harmony RNA

alz_sex_specific_expression

Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women with Alzheimer's Disease

vizad

Visualize Alzheimer's Disease in EHR (VIZAD) by Alice Tang

patientexplorer

patient explorer by Ben Glicksberg

romop

romop by Ben Glicksberg

psevexplorer

psev explorer by Charlotte Nelson

symptom_locator

symptom_locator by Travis Zack

ddx_expander_app

ddx_expander_app by Travis Zack

final_dx_app

final_dx_app by Travis Zack

pecan

Pediatric Cancer Cuyler Luck

vmap

Vaginal Microbiome Atlas in Pregnancy

crohnsrx

Treatment Recommender for Crohn's Disease by Viggy Ravindranath

xcellredirect

xCell running in pure R (R + shiny proxy)